ggcoverage: Visualize Genome Coverage with Various Annotations

The goal of 'ggcoverage' is to simplify the process of visualizing genome coverage. It contains functions to load data from BAM, BigWig or BedGraph files, create genome coverage plot, add various annotations to the coverage plot, including base and amino acid annotation, GC annotation, gene annotation, transcript annotation, ideogram annotation and peak annotation.

Version: 0.7.1
Imports: dplyr, GenomicRanges, ggbio, ggh4x, ggplot2, ggrepel, grDevices, IRanges, magrittr, patchwork, RColorBrewer, rlang, Rsamtools, rtracklayer, scales, stats, utils, methods, GenomeInfoDb, S4Vectors, Biostrings, BSgenome, GenomicAlignments, reshape2, seqinr
Suggests: rmarkdown, knitr, BiocStyle, htmltools, BSgenome.Hsapiens.UCSC.hg19, graphics
Published: 2022-09-06
Author: Yabing Song [aut, cre]
Maintainer: Yabing Song <songyb0519 at>
License: MIT + file LICENSE
NeedsCompilation: no
Materials: README NEWS
CRAN checks: ggcoverage results


Reference manual: ggcoverage.pdf
Vignettes: ggcoverage


Package source: ggcoverage_0.7.1.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
macOS binaries: r-release (arm64): ggcoverage_0.7.1.tgz, r-oldrel (arm64): not available, r-release (x86_64): not available, r-oldrel (x86_64): not available
Old sources: ggcoverage archive


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