PhySortR: A Fast, Flexible Tool for Sorting Phylogenetic Trees

Screens and sorts phylogenetic trees in both traditional and extended Newick format. Allows for the fast and flexible screening (within a tree) of Exclusive clades that comprise only the target taxa and/or Non- Exclusive clades that includes a defined portion of non-target taxa.

Version: 1.0.8
Depends: R (≥ 3.0.0)
Imports: phytools, ape
Published: 2018-08-06
DOI: 10.32614/CRAN.package.PhySortR
Author: Timothy Stephens [aut, cre, trl] (R port), Debashish Bhattacharya [aut], Mark Ragan [aut], Cheong Xin Chan [aut, cph] (Original Perl implementation)
Maintainer: Timothy Stephens <timothy.stephens1 at>
License: GPL (≥ 3)
NeedsCompilation: no
CRAN checks: PhySortR results


Reference manual: PhySortR.pdf


Package source: PhySortR_1.0.8.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
macOS binaries: r-release (arm64): PhySortR_1.0.8.tgz, r-oldrel (arm64): PhySortR_1.0.8.tgz, r-release (x86_64): PhySortR_1.0.8.tgz, r-oldrel (x86_64): PhySortR_1.0.8.tgz
Old sources: PhySortR archive


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