MiSPU: Microbiome Based Sum of Powered Score (MiSPU) Tests

There is an increasing interest in investigating how the compositions of microbial communities are associated with human health and disease. In this package, we present a novel global testing method called aMiSPU, that is highly adaptive and thus high powered across various scenarios, alleviating the issue with the choice of a phylogenetic distance. Our simulations and real data analysis demonstrated that aMiSPU test was often more powerful than several competing methods while correctly controlling type I error rates.

Version: 1.0
Depends: R (≥ 3.2.3), vegan, ape, aSPU, cluster
Imports: Rcpp (≥ 0.12.1)
LinkingTo: Rcpp, RcppArmadillo
Suggests: ade4
Published: 2016-03-18
DOI: 10.32614/CRAN.package.MiSPU
Author: Chong Wu, Wei Pan
Maintainer: Chong Wu <wuxx0845 at umn.edu>
License: GPL-2
NeedsCompilation: yes
CRAN checks: MiSPU results


Reference manual: MiSPU.pdf


Package source: MiSPU_1.0.tar.gz
Windows binaries: r-devel: MiSPU_1.0.zip, r-release: MiSPU_1.0.zip, r-oldrel: MiSPU_1.0.zip
macOS binaries: r-release (arm64): MiSPU_1.0.tgz, r-oldrel (arm64): MiSPU_1.0.tgz, r-release (x86_64): MiSPU_1.0.tgz, r-oldrel (x86_64): MiSPU_1.0.tgz


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