CRAN Package Check Results for Package dispRity

Last updated on 2023-12-04 05:09:02 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.7.0 29.18 230.15 259.33 NOTE
r-devel-linux-x86_64-debian-gcc 1.7.0 23.28 168.58 191.86 NOTE
r-devel-linux-x86_64-fedora-clang 1.7.0 330.77 OK
r-devel-linux-x86_64-fedora-gcc 1.7.0 301.81 OK
r-devel-windows-x86_64 1.7.0 28.00 191.00 219.00 OK
r-patched-linux-x86_64 1.7.0 31.41 221.21 252.62 OK
r-release-linux-x86_64 1.7.0 26.08 221.63 247.71 OK
r-release-macos-arm64 1.7.0 85.00 OK
r-release-macos-x86_64 1.7.0 152.00 OK
r-release-windows-x86_64 1.7.0 35.00 243.00 278.00 OK
r-oldrel-macos-arm64 1.7.0 72.00 OK
r-oldrel-macos-x86_64 1.7.0 107.00 OK
r-oldrel-windows-x86_64 1.7.0 36.00 225.00 261.00 OK

Check Details

Version: 1.7.0
Check: Rd files
Result: NOTE checkRd: (-1) covar.plot.Rd:63: Lost braces 63 | \item code{"intercept"} for using the estimated posterior intercept for each sample. | ^ checkRd: (-1) crown.stem.Rd:10: Lost braces 10 | \item{tree}{a code{"phylo"} object} | ^ checkRd: (-1) dispRity.metric.Rd:46: Lost braces 46 | \item{...}{Optional arguments to be passed to the function. Usual optional arguments are \code{method} for specifying the method for calculating distance passed to \code{\link[vegan]{vegdist}} (e.g. \code{method = "euclidean"} - default - or \code{method = "manhattan"}) or \code{k.root} to scale the result using the eqn{kth} root. See details below for available optional arguments for each function.} | ^ checkRd: (-1) dispRity.metric.Rd:79: Lost braces; missing escapes or markup? 79 | \item \code{func.div}: The functional divergence (Vill'{e}ger et al. 2008): the ratio of deviation from the centroid (this is similar to \code{FD::dbFD()$FDiv}). | ^ checkRd: (-1) dispRity.metric.Rd:81: Lost braces; missing escapes or markup? 81 | \item \code{func.eve}: The functional evenness (Vill'{e}ger et al. 2008): the minimal spanning tree distances evenness (this is similar to \code{FD::dbFD()$FEve}). If the matrix used is not a distance matrix, the distance method can be passed using, for example \code{method = "euclidean"} (default). | ^ checkRd: (-1) dispRity.metric.Rd:97: Lost braces; missing escapes or markup? 97 | \item \code{centroids}: calculates the distance between each row and the centroid of the matrix (Lalibert'{e} 2010). This function can take an optional arguments \code{centroid} for defining the centroid (if missing (default), the centroid of the matrix is used). This argument can be either a subset of coordinates matching the matrix's dimensions (e.g. \code{c(0, 1, 2)} for a matrix with three columns) or a single value to be the coordinates of the centroid (e.g. \code{centroid = 0} will set the centroid coordinates to \code{c(0, 0, 0)} for a three dimensional matrix). NOTE: distance is calculated as \code{"euclidean"} by default, this can be changed using the \code{method} argument. | ^ checkRd: (-1) dispRity.metric.Rd:119: Lost braces 119 | Other options include the centering of the projections on 0.5 (code{centre = TRUE}; default) ranging the projection onto the vector (\code{point1}, \code{point2}) between -1 and 1 (higher or lower values project beyond the vector); and whether to output the projection values as absolute values (\code{abs = TRUE}; default). These two last options only affect the results from \code{measure = "position"}. | ^ checkRd: (-1) dtt.dispRity.Rd:33: Lost braces 33 | \item{...}{Any other arguments to be passed to \\code{geiger::dtt}.} | ^ checkRd: (-1) model.test.Rd:52: Lost braces in \itemize; meant \describe ? checkRd: (-1) model.test.Rd:54: Lost braces in \itemize; meant \describe ? checkRd: (-1) model.test.Rd:56: Lost braces in \itemize; meant \describe ? checkRd: (-1) model.test.Rd:58: Lost braces in \itemize; meant \describe ? checkRd: (-1) model.test.Rd:60: Lost braces in \itemize; meant \describe ? checkRd: (-1) model.test.Rd:62: Lost braces in \itemize; meant \describe ? checkRd: (-1) model.test.Rd:36: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) model.test.Rd:37: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) model.test.Rd:38: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) model.test.Rd:39: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) model.test.Rd:40: Lost braces in \itemize; \value handles \item{}{} directly Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc