Last updated on 2024-09-13 05:49:27 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0.4 | 10.70 | 475.52 | 486.22 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 1.0.4 | 7.04 | 287.29 | 294.33 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 1.0.4 | 803.16 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.0.4 | 775.20 | OK | |||
| r-devel-windows-x86_64 | 1.0.4 | 13.00 | 385.00 | 398.00 | NOTE | |
| r-patched-linux-x86_64 | 1.0.4 | 17.68 | 441.89 | 459.57 | OK | |
| r-release-linux-x86_64 | 1.0.4 | 9.55 | 107.87 | 117.42 | ERROR | |
| r-release-macos-arm64 | 1.0.4 | 188.00 | OK | |||
| r-release-macos-x86_64 | 1.0.4 | 362.00 | OK | |||
| r-release-windows-x86_64 | 1.0.4 | 13.00 | 384.00 | 397.00 | OK | |
| r-oldrel-macos-arm64 | 1.0.4 | 182.00 | OK | |||
| r-oldrel-macos-x86_64 | 1.0.4 | 443.00 | OK | |||
| r-oldrel-windows-x86_64 | 1.0.4 | 15.00 | 517.00 | 532.00 | OK |
Version: 1.0.4
Check: Rd cross-references
Result: NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
DynamicGrowth.Rd: geom_line
FitDynamicGrowth.Rd: geom_line, geom_point
FitDynamicGrowthMCMC.Rd: geom_line, geom_point
FitIsoGrowth.Rd: modFit, geom_line, geom_point
FitMultipleDynamicGrowth.Rd: geom_line
FitMultipleGrowthMCMC.Rd: geom_line
FitSecondaryGrowth.Rd: modFit
GlobalGrowthFit.Rd: geom_line
GrowthFit.Rd: geom_line, geom_point
GrowthPrediction.Rd: geom_line
GrowthUncertainty.Rd: geom_line, geom_ribbon
IsothermalGrowth.Rd: geom_line
StochasticGrowth.Rd: geom_line, geom_ribbon
TimeDistribution.Rd: geom_histogram
check_growth_guess.Rd: ggplot
dBaranyi.Rd: ode
fit_growth.Rd: modFit, modMCMC
fit_isothermal_growth.Rd: modFit
fit_multiple_growth.Rd: modFit
fit_multiple_growth_MCMC.Rd: modMCMC
fit_secondary_growth.Rd: modFit
get_dyna_residuals.Rd: modFit, modCost
get_multi_dyna_residuals.Rd: modFit
predict_dynamic_growth.Rd: ode
predict_growth.Rd: ode
show_guess_dynamic.Rd: ggplot
show_guess_primary.Rd: ggplot
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64
Version: 1.0.4
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘tidyverse’
Flavor: r-release-linux-x86_64
Version: 1.0.4
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘v01_growth_predictions.Rmd’ using rmarkdown
Quitting from lines 18-20 [setup] (v01_growth_predictions.Rmd)
Error: processing vignette 'v01_growth_predictions.Rmd' failed with diagnostics:
there is no package called 'tidyverse'
--- failed re-building ‘v01_growth_predictions.Rmd’
--- re-building ‘v02_growth_fitting.Rmd’ using rmarkdown
Quitting from lines 19-21 [setup] (v02_growth_fitting.Rmd)
Error: processing vignette 'v02_growth_fitting.Rmd' failed with diagnostics:
there is no package called 'tidyverse'
--- failed re-building ‘v02_growth_fitting.Rmd’
--- re-building ‘v03_growth_uncertainty.Rmd’ using rmarkdown
Quitting from lines 19-21 [setup] (v03_growth_uncertainty.Rmd)
Error: processing vignette 'v03_growth_uncertainty.Rmd' failed with diagnostics:
there is no package called 'tidyverse'
--- failed re-building ‘v03_growth_uncertainty.Rmd’
--- re-building ‘v04_model_comparison.Rmd’ using rmarkdown
Quitting from lines 18-20 [setup] (v04_model_comparison.Rmd)
Error: processing vignette 'v04_model_comparison.Rmd' failed with diagnostics:
there is no package called 'tidyverse'
--- failed re-building ‘v04_model_comparison.Rmd’
--- re-building ‘v05_custom_stochastic.Rmd’ using rmarkdown
Quitting from lines 18-20 [setup] (v05_custom_stochastic.Rmd)
Error: processing vignette 'v05_custom_stochastic.Rmd' failed with diagnostics:
there is no package called 'tidyverse'
--- failed re-building ‘v05_custom_stochastic.Rmd’
--- re-building ‘v21_math_models.Rmd’ using rmarkdown
--- finished re-building ‘v21_math_models.Rmd’
--- re-building ‘v22_datasets.Rmd’ using rmarkdown
--- finished re-building ‘v22_datasets.Rmd’
--- re-building ‘v23_units-dilemma.Rmd’ using rmarkdown
Quitting from lines 18-21 [setup] (v23_units-dilemma.Rmd)
Error: processing vignette 'v23_units-dilemma.Rmd' failed with diagnostics:
there is no package called 'tidyverse'
--- failed re-building ‘v23_units-dilemma.Rmd’
--- re-building ‘v24_publication_figures.Rmd’ using rmarkdown
Quitting from lines 19-22 [setup] (v24_publication_figures.Rmd)
Error: processing vignette 'v24_publication_figures.Rmd' failed with diagnostics:
there is no package called 'tidyverse'
--- failed re-building ‘v24_publication_figures.Rmd’
--- re-building ‘v31_secondary_for_static.Rmd’ using rmarkdown
Quitting from lines 18-21 [setup] (v31_secondary_for_static.Rmd)
Error: processing vignette 'v31_secondary_for_static.Rmd' failed with diagnostics:
there is no package called 'tidyverse'
--- failed re-building ‘v31_secondary_for_static.Rmd’
--- re-building ‘v99_deprecated.Rmd’ using rmarkdown
Quitting from lines 18-20 [unnamed-chunk-2] (v99_deprecated.Rmd)
Error: processing vignette 'v99_deprecated.Rmd' failed with diagnostics:
there is no package called 'tidyverse'
--- failed re-building ‘v99_deprecated.Rmd’
SUMMARY: processing the following files failed:
‘v01_growth_predictions.Rmd’ ‘v02_growth_fitting.Rmd’
‘v03_growth_uncertainty.Rmd’ ‘v04_model_comparison.Rmd’
‘v05_custom_stochastic.Rmd’ ‘v23_units-dilemma.Rmd’
‘v24_publication_figures.Rmd’ ‘v31_secondary_for_static.Rmd’
‘v99_deprecated.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-release-linux-x86_64