CRAN Package Check Results for Package dbparser

Last updated on 2023-03-23 04:53:16 CET.

Flavor	Version	T_install	T_check	T_total	Status
r-devel-linux-x86_64-debian-clang	2.0.0	18.51	130.37	148.88	ERROR
r-devel-linux-x86_64-debian-gcc	2.0.0	13.27	97.40	110.67	ERROR
r-devel-linux-x86_64-fedora-clang	2.0.0			197.31	OK
r-devel-linux-x86_64-fedora-gcc	2.0.0			191.92	OK
r-devel-windows-x86_64	2.0.0	68.00	175.00	243.00	OK
r-patched-linux-x86_64	2.0.0	20.24	126.26	146.50	ERROR
r-release-linux-x86_64	2.0.0	16.79	125.60	142.39	ERROR
r-release-macos-arm64	2.0.0			45.00	OK
r-release-macos-x86_64	2.0.0			74.00	OK
r-release-windows-x86_64	2.0.0	87.00	180.00	267.00	OK
r-oldrel-macos-arm64	2.0.0			50.00	OK
r-oldrel-macos-x86_64	2.0.0			78.00	OK
r-oldrel-windows-ix86+x86_64	2.0.0	34.00	166.00	200.00	OK

Check Details

Version: 2.0.0
Check: tests
Result: ERROR
     Running ‘testthat.R’ [72s/86s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > library(testthat)
     > library(dbparser)
     >
     > test_check("dbparser")
     [ FAIL 1 | WARN 0 | SKIP 2 | PASS 72 ]

     ══ Skipped tests ═══════════════════════════════════════════════════════════════
     • On CRAN (2)

     ══ Failed tests ════════════════════════════════════════════════════════════════
     ── Error ('test-drugbank-parser.R:327:5'): parse DrugBank DB - zim file ────────
     <XMLParserErrorList/simpleError/error/condition>
     Error: 1: Start tag expected, '<' not found

     Backtrace:
     ▆
     1. ├─purrr (local) q_parser(system.file("extdata", small_molecule, package = "dbparser")) at test-drugbank-parser.R:327:4
     2. │ ├─purrr:::capture_output(.f(...))
     3. │ │ └─base::withCallingHandlers(code, warning = wHandler, message = mHandler)
     4. │ └─dbparser (local) .f(...)
     5. │ └─dbparser:::read_drugbank_xml_db(db_path = db_path)
     6. │ └─XML::xmlParse(db_path)
     7. └─XML (local) `<fn>`(`<chr>`)

     [ FAIL 1 | WARN 0 | SKIP 2 | PASS 72 ]
     Error: Test failures
     Execution halted
Flavor: r-devel-linux-x86_64-debian-clang

Version: 2.0.0
Check: tests
Result: ERROR
     Running ‘testthat.R’ [53s/86s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > library(testthat)
     > library(dbparser)
     >
     > test_check("dbparser")
     [ FAIL 1 | WARN 0 | SKIP 2 | PASS 72 ]

     ══ Skipped tests ═══════════════════════════════════════════════════════════════
     • On CRAN (2)

     ══ Failed tests ════════════════════════════════════════════════════════════════
     ── Error ('test-drugbank-parser.R:327:5'): parse DrugBank DB - zim file ────────
     <XMLParserErrorList/simpleError/error/condition>
     Error: 1: Start tag expected, '<' not found

     Backtrace:
     ▆
     1. ├─purrr (local) q_parser(system.file("extdata", small_molecule, package = "dbparser")) at test-drugbank-parser.R:327:4
     2. │ ├─purrr:::capture_output(.f(...))
     3. │ │ └─base::withCallingHandlers(code, warning = wHandler, message = mHandler)
     4. │ └─dbparser (local) .f(...)
     5. │ └─dbparser:::read_drugbank_xml_db(db_path = db_path)
     6. │ └─XML::xmlParse(db_path)
     7. └─XML (local) `<fn>`(`<chr>`)

     [ FAIL 1 | WARN 0 | SKIP 2 | PASS 72 ]
     Error: Test failures
     Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc

Version: 2.0.0
Check: tests
Result: ERROR
     Running ‘testthat.R’ [72s/83s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > library(testthat)
     > library(dbparser)
     >
     > test_check("dbparser")
     [ FAIL 1 | WARN 0 | SKIP 2 | PASS 72 ]

     ══ Skipped tests ═══════════════════════════════════════════════════════════════
     • On CRAN (2)

     ══ Failed tests ════════════════════════════════════════════════════════════════
     ── Error ('test-drugbank-parser.R:327:5'): parse DrugBank DB - zim file ────────
     <XMLParserErrorList/simpleError/error/condition>
     Error: 1: Start tag expected, '<' not found

     Backtrace:
     ▆
     1. ├─purrr (local) q_parser(system.file("extdata", small_molecule, package = "dbparser")) at test-drugbank-parser.R:327:4
     2. │ ├─purrr:::capture_output(.f(...))
     3. │ │ └─base::withCallingHandlers(code, warning = wHandler, message = mHandler)
     4. │ └─dbparser (local) .f(...)
     5. │ └─dbparser:::read_drugbank_xml_db(db_path = db_path)
     6. │ └─XML::xmlParse(db_path)
     7. └─XML (local) `<fn>`(`<chr>`)

     [ FAIL 1 | WARN 0 | SKIP 2 | PASS 72 ]
     Error: Test failures
     Execution halted
Flavor: r-patched-linux-x86_64

Version: 2.0.0
Check: tests
Result: ERROR
     Running ‘testthat.R’ [71s/81s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > library(testthat)
     > library(dbparser)
     >
     > test_check("dbparser")
     [ FAIL 1 | WARN 0 | SKIP 2 | PASS 72 ]

     ══ Skipped tests ═══════════════════════════════════════════════════════════════
     • On CRAN (2)

     ══ Failed tests ════════════════════════════════════════════════════════════════
     ── Error ('test-drugbank-parser.R:327:5'): parse DrugBank DB - zim file ────────
     <XMLParserErrorList/simpleError/error/condition>
     Error: 1: Start tag expected, '<' not found

     Backtrace:
     ▆
     1. ├─purrr (local) q_parser(system.file("extdata", small_molecule, package = "dbparser")) at test-drugbank-parser.R:327:4
     2. │ ├─purrr:::capture_output(.f(...))
     3. │ │ └─base::withCallingHandlers(code, warning = wHandler, message = mHandler)
     4. │ └─dbparser (local) .f(...)
     5. │ └─dbparser:::read_drugbank_xml_db(db_path = db_path)
     6. │ └─XML::xmlParse(db_path)
     7. └─XML (local) `<fn>`(`<chr>`)

     [ FAIL 1 | WARN 0 | SKIP 2 | PASS 72 ]
     Error: Test failures
     Execution halted
Flavor: r-release-linux-x86_64