CRAN Package Check Results for Package NicheBarcoding

Last updated on 2023-02-01 04:52:02 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0 5.91 427.10 433.01 OK
r-devel-linux-x86_64-debian-gcc 1.0 5.15 300.45 305.60 OK
r-devel-linux-x86_64-fedora-clang 1.0 509.31 NOTE
r-devel-linux-x86_64-fedora-gcc 1.0 545.92 NOTE
r-devel-windows-x86_64 1.0 20.00 423.00 443.00 OK
r-patched-linux-x86_64 1.0 5.27 403.91 409.18 OK
r-release-linux-x86_64 1.0 4.95 399.61 404.56 OK
r-release-macos-arm64 1.0 154.00 NOTE
r-release-macos-x86_64 1.0 193.00 NOTE
r-release-windows-x86_64 1.0 19.00 443.00 462.00 OK
r-oldrel-macos-arm64 1.0 144.00 NOTE
r-oldrel-macos-x86_64 1.0 201.00 NOTE
r-oldrel-windows-ix86+x86_64 1.0 11.00 470.00 481.00 ERROR

Check Details

Version: 1.0
Check: dependencies in R code
Result: NOTE
    Namespace in Imports field not imported from: ‘rJava’
     All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Version: 1.0
Check: tests
Result: ERROR
     Running 'testthat.R' [351s]
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
     > library(testthat)
     > library(NicheBarcoding)
     >
     > test_check("NicheBarcoding")
     Loading required namespace: rJava
     Generating the pseudo present points ......
    
     >>> 1/24 Lasiocampidae_Gastropacha_quercifolia
     >>> 2/24 Lasiocampidae_Dendrolimus_punctatus
     >>> 3/24 Lasiocampidae_Alompra_ferruginea
     >>> 4/24 Lasiocampidae_Paralebeda_femorata
     >>> 5/24 Lasiocampidae_Odonestis_pruni
     >>> 6/24 Lasiocampidae_Dendrolimus_superans
     >>> 7/24 Lasiocampidae_Gastropacha_populifolia
     >>> 8/24 Lasiocampidae_Dendrolimus_tabulaeformis
     >>> 9/24 Lasiocampidae_Trabala_vishnou
     >>> 10/24 Lasiocampidae_Dendrolimus_kikuchii
     >>> 11/24 Lasiocampidae_Euthrix_laeta
     >>> 12/24 Lasiocampidae_Malacosoma_neustria
     >>> 13/24 Lasiocampidae_Euthrix_isocyma
     >>> 14/24 Lasiocampidae_Euthrix_inobtrusa
     >>> 15/24 Lasiocampidae_Paralebeda_lucifuga
     >>> 16/24 Lasiocampidae_Radhica_puana
     >>> 17/24 Lasiocampidae_Micropacha_gejra
     >>> 18/24 Lasiocampidae_Syrastrena_sumatrana
     >>> 19/24 Lasiocampidae_Streblote_igniflua
     >>> 20/24 Lasiocampidae_Kunugia_undans
     >>> 21/24 Lasiocampidae_Odontocraspis_hasora
     >>> 22/24 Lasiocampidae_Cosmotriche_inexperta
     >>> 23/24 Lasiocampidae_Estigena_philippinensis
     >>> 1/2 Lasiocampidae_Gastropacha_quercifolia
     'nperm' >= set of all permutations: complete enumeration.
     Set of permutations < 'minperm'. Generating entire set.
     [ FAIL 1 | WARN 2 | SKIP 0 | PASS 50 ]
    
     == Failed tests ================================================================
     -- Error ('test-NBSI.R:126'): tests for abnormal conditions --------------------
     Error in `pseudo.present.points(prese.lonlat[, 3:5], 10, lon.mean, lat.mean,
     en.vir, map = F)`: The location of Lasiocampidae_Paralebeda_femorata must be re-confirmed!
    
     Backtrace:
     x
     1. +-testthat::expect_error(...) at test-NBSI.R:126:2
     2. | \-testthat:::expect_condition_matching(...)
     3. | \-testthat:::quasi_capture(...)
     4. | +-testthat (local) .capture(...)
     5. | | \-base::withCallingHandlers(...)
     6. | \-rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
     7. \-NicheBarcoding::NBSI(...)
     8. \-NicheBarcoding::pseudo.present.points(...)
    
     [ FAIL 1 | WARN 2 | SKIP 0 | PASS 50 ]
     Error: Test failures
     Execution halted
Flavor: r-oldrel-windows-ix86+x86_64