Last updated on 2023-02-01 04:52:02 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0 | 5.91 | 427.10 | 433.01 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.0 | 5.15 | 300.45 | 305.60 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.0 | 509.31 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 1.0 | 545.92 | NOTE | |||
| r-devel-windows-x86_64 | 1.0 | 20.00 | 423.00 | 443.00 | OK | |
| r-patched-linux-x86_64 | 1.0 | 5.27 | 403.91 | 409.18 | OK | |
| r-release-linux-x86_64 | 1.0 | 4.95 | 399.61 | 404.56 | OK | |
| r-release-macos-arm64 | 1.0 | 154.00 | NOTE | |||
| r-release-macos-x86_64 | 1.0 | 193.00 | NOTE | |||
| r-release-windows-x86_64 | 1.0 | 19.00 | 443.00 | 462.00 | OK | |
| r-oldrel-macos-arm64 | 1.0 | 144.00 | NOTE | |||
| r-oldrel-macos-x86_64 | 1.0 | 201.00 | NOTE | |||
| r-oldrel-windows-ix86+x86_64 | 1.0 | 11.00 | 470.00 | 481.00 | ERROR |
Version: 1.0
Check: dependencies in R code
Result: NOTE
Namespace in Imports field not imported from: ‘rJava’
All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Version: 1.0
Check: tests
Result: ERROR
Running 'testthat.R' [351s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(NicheBarcoding)
>
> test_check("NicheBarcoding")
Loading required namespace: rJava
Generating the pseudo present points ......
>>> 1/24 Lasiocampidae_Gastropacha_quercifolia
>>> 2/24 Lasiocampidae_Dendrolimus_punctatus
>>> 3/24 Lasiocampidae_Alompra_ferruginea
>>> 4/24 Lasiocampidae_Paralebeda_femorata
>>> 5/24 Lasiocampidae_Odonestis_pruni
>>> 6/24 Lasiocampidae_Dendrolimus_superans
>>> 7/24 Lasiocampidae_Gastropacha_populifolia
>>> 8/24 Lasiocampidae_Dendrolimus_tabulaeformis
>>> 9/24 Lasiocampidae_Trabala_vishnou
>>> 10/24 Lasiocampidae_Dendrolimus_kikuchii
>>> 11/24 Lasiocampidae_Euthrix_laeta
>>> 12/24 Lasiocampidae_Malacosoma_neustria
>>> 13/24 Lasiocampidae_Euthrix_isocyma
>>> 14/24 Lasiocampidae_Euthrix_inobtrusa
>>> 15/24 Lasiocampidae_Paralebeda_lucifuga
>>> 16/24 Lasiocampidae_Radhica_puana
>>> 17/24 Lasiocampidae_Micropacha_gejra
>>> 18/24 Lasiocampidae_Syrastrena_sumatrana
>>> 19/24 Lasiocampidae_Streblote_igniflua
>>> 20/24 Lasiocampidae_Kunugia_undans
>>> 21/24 Lasiocampidae_Odontocraspis_hasora
>>> 22/24 Lasiocampidae_Cosmotriche_inexperta
>>> 23/24 Lasiocampidae_Estigena_philippinensis
>>> 1/2 Lasiocampidae_Gastropacha_quercifolia
'nperm' >= set of all permutations: complete enumeration.
Set of permutations < 'minperm'. Generating entire set.
[ FAIL 1 | WARN 2 | SKIP 0 | PASS 50 ]
== Failed tests ================================================================
-- Error ('test-NBSI.R:126'): tests for abnormal conditions --------------------
Error in `pseudo.present.points(prese.lonlat[, 3:5], 10, lon.mean, lat.mean,
en.vir, map = F)`: The location of Lasiocampidae_Paralebeda_femorata must be re-confirmed!
Backtrace:
x
1. +-testthat::expect_error(...) at test-NBSI.R:126:2
2. | \-testthat:::expect_condition_matching(...)
3. | \-testthat:::quasi_capture(...)
4. | +-testthat (local) .capture(...)
5. | | \-base::withCallingHandlers(...)
6. | \-rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. \-NicheBarcoding::NBSI(...)
8. \-NicheBarcoding::pseudo.present.points(...)
[ FAIL 1 | WARN 2 | SKIP 0 | PASS 50 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-windows-ix86+x86_64